Scaffold Ga0181377_1016189

Overview

Basic Information

• Taxon OID: 3300017706
• Scaffold ID: Ga0181377_1016189
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1688
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -29.499
  • Long. (^o): -71.609
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018286	Metagenome	236	Y
F030886	Metagenome	184	Y
F059942	Metagenome	133	Y
F070089	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181377_10161892	F030886	AGGA	MSYHGNPPPDYNQVGIAVVNPLHRIEQKLKKVQDILDNISDASILTANDLKIKIQRVLDG
Ga0181377_10161894	F018286	GGAGG	MNILTTFVLMGVIDSHDGVFATVELNTNPASNGGPATAVMPVTAFPCEISEGQVFFIVKMHDEQDAQVICQEESEDARQADEPDTCMH
Ga0181377_10161896	F059942	GAG	MKTGDLISFKPINFGLEDWSNPSIVVNEYESPNEGLWTIWCDGVYCVIDDDNYEIVHLTS
Ga0181377_10161897	F070089	GGA	VKVGDLVKFESVLNDSMDRYTVEHGLVIQLSKTGHDTLSIQVLFNNGETWWVDSGRLEVVSESR