Scaffold Ga0181377_1014294

Overview

Basic Information

• Taxon OID: 3300017706
• Scaffold ID: Ga0181377_1014294
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1838
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -29.499
  • Long. (^o): -71.609
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020816	Metagenome / Metatranscriptome	222	N
F032867	Metagenome / Metatranscriptome	179	Y
F042853	Metagenome / Metatranscriptome	157	N
F052274	Metagenome / Metatranscriptome	143	N
F054777	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181377_10142942	F054777	AGGAGG	MTNKINDETLERLYEDVVADDEAGLIDDVINNVAYLNGLHADDDRDEILQFIAEQEFYDQFT
Ga0181377_10142943	F042853	AGGAGG	MSTEGTYLIEIERHYIATIEVEADSKREAIRYAHSDENQHIANRNEDYFYHFEDLLHKPTVARFKSYEEQYPEED
Ga0181377_10142944	F032867	AGGAGG	MDELEKMIDNLVDNHYRVQHLIGTEADESEYLADIEEEDDDSI
Ga0181377_10142945	F020816	AGGAGG	MIVYEITVSTTVQIDSLDDYAESKEHAIDIMWDRWGVYKDTLEITEVKTWEEDDE
Ga0181377_10142949	F052274	GAGG	MNRTLYKKLEDICAREYIINKLSANKFRTFVDFLYDDIRTWDKPMNVSEVDIIHRIEE