Basic Information | |
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Taxon OID | 3300017706 Open in IMG/M |
Scaffold ID | Ga0181377_1012669 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1984 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (88.89%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Subarctic Pacific Ocean | |||||||
Coordinates | Lat. (o) | -29.499 | Long. (o) | -71.609 | Alt. (m) | Depth (m) | 12 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F003051 | Metagenome / Metatranscriptome | 510 | Y |
F015812 | Metagenome / Metatranscriptome | 252 | Y |
F100938 | Metagenome | 102 | N |
F106085 | Metagenome / Metatranscriptome | 100 | N |
Protein ID | Family | RBS | Sequence |
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Ga0181377_10126694 | F003051 | GAGG | MKVKHLKTKVSIDMSVSEYDTLFKYINKIDSMLNTLHETNDLWLSDVHNLSSLKYDLTELLDAEWNPDTYRYIKRGS |
Ga0181377_10126695 | F106085 | AGG | MTNNLLERLRKKLLFLLDKLEIKFRMLIKSKQNNKIIINKDIKNNIPKHLKGLNNKQLKDLESLFRMRI |
Ga0181377_10126696 | F015812 | AGGAG | MSKTLYKRLEDICAREYVVNKLSEHKFRTFVDLLYDDIKTWDKPMSVSEVDVIHRVEEHLSHMVSSMLVDEHIGTTHD |
Ga0181377_10126699 | F100938 | N/A | MSDWLDGTKPKYVECIYETAIEFDLEELDIDYDNIENYHIKYGTLYVEFKDGTSESYEGNQRETDYKWATSEGVFDESWTLVEGLN |
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