Scaffold Ga0181377_1007051

Overview

Basic Information

• Taxon OID: 3300017706
• Scaffold ID: Ga0181377_1007051
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2878
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -29.499
  • Long. (^o): -71.609
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010532	Metagenome	302	N
F032867	Metagenome / Metatranscriptome	179	Y
F042853	Metagenome / Metatranscriptome	157	N
F098031	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181377_100705111	F010532	AGGAG	MNRTLYKKLEDICAREYIINKLSANKFRTFVDFLYDDIRTWDEPMKVSEVEIIHRIEEHMSYMVSSFLNKSYEGIGMDEQSLREA
Ga0181377_10070513	F042853	AGGAGG	MSKEGTYLIEIERHYIATIEVEADSKREAIRYAHSDENQHIANHNEDYFYNFQDFKHDAEVVRFKSYEEQYPEEV
Ga0181377_10070516	F032867	AGGAG	MDEETKQLIDYLVDGYYRDAYLIGTEADESEYLADIEEEDDEXLDRRN
Ga0181377_10070518	F098031	GGAGG	MKYSVELHVIQIHDVEVEATSYEDARNKAIQEWKNGYIYNDVGSPTFCKEEAKVVSFTSMPTIEEVSNG