Scaffold Ga0181377_1006422

Overview

Basic Information

• Taxon OID: 3300017706
• Scaffold ID: Ga0181377_1006422
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3064
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -29.499
  • Long. (^o): -71.609
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010128	Metagenome / Metatranscriptome	308	Y
F057372	Metagenome / Metatranscriptome	136	Y
F069999	Metagenome	123	Y
F071136	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181377_10064222	F071136	N/A	MEFSTDKFMTTIRKQLDGIADDFVNDMADDAHIVARRLTSELDNEKALAHMNEIGTLAEMCTNMKHDCDALANTFETIFRREHGGGKEAANGLDAMRIITEVSNDINVIAPHISWLFEDSDCTIIQNIYNSSFIETFEIPAE
Ga0181377_10064223	F010128	N/A	MAKDNPTKPGGMRRFDELVAIRNVFGNDTVLLEELIRVMSNRDASYLFRRVAKSFDVTGALNRELDTINQRD
Ga0181377_10064225	F069999	N/A	MSVLNNLIPEVKELLEADKEQYPFLYKNIIKDLQQSQLSTDVKVSTANTLIGYAEAAKVEFESDNFVLKLYNVFGK
Ga0181377_10064228	F057372	N/A	MKILEMNKAELFDILEEMIEHTSIDIIFSELCQAMTTDELHANIKHLDQHLFENHFLTRE