Basic Information | |
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Taxon OID | 3300017706 Open in IMG/M |
Scaffold ID | Ga0181377_1005943 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3219 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (81.82%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Subarctic Pacific Ocean | |||||||
Coordinates | Lat. (o) | -29.499 | Long. (o) | -71.609 | Alt. (m) | Depth (m) | 12 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F003051 | Metagenome / Metatranscriptome | 510 | Y |
F061778 | Metagenome | 131 | N |
F095310 | Metagenome / Metatranscriptome | 105 | N |
Protein ID | Family | RBS | Sequence |
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Ga0181377_10059432 | F061778 | AGGAGG | MNKYNVAVHYEEGFSVEVTAPNVEDARKLAQELVDTYCGVSESFDNVGQDEGKYLKTYHRDCWIVGEN |
Ga0181377_10059435 | F003051 | N/A | MKTKILKSKVTIDMSVSEYDTLFKYINKIDSMLNTVHETNDLWLSDVQNLSSLQWELTQLLDAEWNPDTYRYIKRGSK |
Ga0181377_10059436 | F095310 | GAGG | MKMFLIKLLTTLAVFLTMYVSIIIVNDDTVENTDEIITLNRKVQSLEETLQAVKEQQNYLQIMHKGLRDALDNRTVEVDRLVEQAVDDKFNEQSATGGFGVLTGEVLPVEKVVEEVVE |
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