Scaffold Ga0181377

Basic Information
Taxon OID	3300017706 Open in IMG/M
Scaffold ID	Ga0181377_1005136 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3536
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-29.499	Long. (^o)	-71.609	Alt. (m)	Depth (m)	12
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F015734	Metagenome / Metatranscriptome	252	Y
F019756	Metagenome / Metatranscriptome	228	Y
F050011	Metagenome	146	N
F074154	Metagenome	120	N

Family

Category

Number of Sequences

3D Structure?

Metagenome / Metatranscriptome

252

Metagenome / Metatranscriptome

228

Metagenome

146

Metagenome

120

Protein ID	Family	RBS	Sequence
Ga0181377_10051362	F050011	N/A	MNTALENFSEYIKPYLLDTIAIKTDKKVIRKGKLKIFQVKQHYARLTLEDGERTRIYEIPYPYDISKEGNVTTLNYKTDVFLNIQDLDLQVKLLDSTKKSKLYDELVYILPLREVD
Ga0181377_10051363	F015734	N/A	VIIQRSALDIALLSNVCDVRFVRRDPRPGDGPTRRMFATKSYDLLNSVNGRTTLNYFTPKGPKKINEAADNLLVVWDILMQNYRTINCNQVDLIEKIPATEEFWTYFNDNIYPMSPAQKAGFMNS
Ga0181377_10051364	F019756	N/A	MPVHESIDRLPSQKHLIDLSTHSEGDIGLTDDFELNFIFDDILLVQYVDENDEGEIQRNGIFVPTNAVTKAWRKARVILTGPKAEYVKVGDVVIFPNNLGVSISNLDINGKKLKKGIFLNEDRLFGICTLKE
Ga0181377_10051365	F074154	N/A	MNFFQLQNKLFFSDKRKQPDYIDSEGEQAFVPFLLNRWLSMYSKDTISFTNNILNKYCSIFDDKQKMFRFYYNIIPRLQFKRISYIKKKKKDKTEEAEHLELIAKNKHISVRELRSYMEM

Protein ID

Family

RBS

Sequence

Ga0181377_10051362

N/A

MNTALENFSEYIKPYLLDTIAIKTDKKVIRKGKLKIFQVKQHYARLTLEDGERTRIYEIPYPYDISKEGNVTTLNYKTDVFLNIQDLDLQVKLLDSTKKSKLYDELVYILPLREVD

Ga0181377_10051363

N/A

VIIQRSALDIALLSNVCDVRFVRRDPRPGDGPTRRMFATKSYDLLNSVNGRTTLNYFTPKGPKKINEAADNLLVVWDILMQNYRTINCNQVDLIEKIPATEEFWTYFNDNIYPMSPAQKAGFMNS

Ga0181377_10051364

N/A

MPVHESIDRLPSQKHLIDLSTHSEGDIGLTDDFELNFIFDDILLVQYVDENDEGEIQRNGIFVPTNAVTKAWRKARVILTGPKAEYVKVGDVVIFPNNLGVSISNLDINGKKLKKGIFLNEDRLFGICTLKE

Ga0181377_10051365

N/A

MNFFQLQNKLFFSDKRKQPDYIDSEGEQAFVPFLLNRWLSMYSKDTISFTNNILNKYCSIFDDKQKMFRFYYNIIPRLQFKRISYIKKKKKDKTEEAEHLELIAKNKHISVRELRSYMEM

NMPFamsDB