Scaffold Ga0181377_1002126

Overview

Basic Information

• Taxon OID: 3300017706
• Scaffold ID: Ga0181377_1002126
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6159
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (42.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -29.499
  • Long. (^o): -71.609
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003612	Metagenome	477	Y
F018084	Metagenome	237	Y
F019556	Metagenome	229	Y
F049046	Metagenome / Metatranscriptome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181377_100212617	F018084	GGA	MVKTALVIVAMLVCPGIIMGLISSYRAGQKPHRDLYLMIKKFAHRK
Ga0181377_100212618	F019556	N/A	MTVCAVAFHEHTYAVWELRELLIERQLNLWELLEQLKYVTEEQRPVVYSDIEHITQEINRIIDQLLQHDKSQHP
Ga0181377_10021264	F003612	AGGA	MPATPNNFKVTNAIGETDNFIGADINFYHITLKDNSAAAVDVRTELGYDEAVHNVTRAVLDRGTIVHQRIDDANSGRIDIAMERAGWTAATLQTALRDLGATVGVNDKDLRGTVVTETELKLDAS
Ga0181377_10021268	F049046	N/A	MTKRLLISGCSFAVVYNDLQQELKQLFGVDQVINISELGGSPDRQIRGTIEWIAQNGKPDMVIMPVSFAHRFDLPIAGKVNPLHNRHYRCLWHMNLGKNYGSGNPIDPKYDRDIVETYLKTGAVVHSNDHPGHDNMWAKLITFQAYLELNKIRHLIFDTGNYYEKVSGLDQPGMTKKKLIEDCKGIYKFFTFCSNVWMYQQLTDEEKINYVPWYKPQRNKAVGKILSDEEVTILHHNKHQVLKLMNYLVEQGAVRTP