Scaffold Ga0181377

Basic Information
Taxon OID	3300017706 Open in IMG/M
Scaffold ID	Ga0181377_1001276 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017706 Open in IMG/M

Scaffold ID

Ga0181377_1001276 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8191
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (16.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8191

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (16.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-29.499	Long. (^o)	-71.609	Alt. (m)	Depth (m)	12
Location on Map

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Source Dataset Sampling Location

Location Name

Subarctic Pacific Ocean

Coordinates

Lat. (^o)

-29.499

Long. (^o)

-71.609

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009463	Metagenome / Metatranscriptome	317	Y
F012129	Metagenome / Metatranscriptome	283	Y
F013249	Metagenome / Metatranscriptome	273	Y
F093868	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181377_100127612	F093868	N/A	MKKLLLLLLTLIPTLLLGQLTSSVDGIDIDLVYSGTTADANKLLNKVQVNDTIVVKLNLSNLSSNTITYVHVDVQYNVNAYARVAYSFDVPTNAQTSNGNWSGNGMKWTVNPNYDANDLWAQWSTQGGSYNEVAGWEVDHVEAVSTSGISGNYATLHFKVKDAGANHSYTDNIIMTMARVTDNTGTSEYTFPVGKVRGYDTMAITHIPLEDLDSNIYIKADANSNFDVTKVGVVVQKNGTAITNNLYFDSGGQINVTDYITTSTDSYTLDFVTSYNATEWEALLDNIITISDVTLTLNELGQYGHGNVGNVFTTGIQYSAVDSNQDRDLTPQDAYNLLGHVMGSVDIIPDDGTGIFNNSFKPIKKTDYNTWSIYKFKNNVTEPNHSVVHPITVDFSQSSYTEWFKFGFIGDANGSHSSPIDGTDASSLTARSNNNYTISSAPVMSYGQQVMADGIIQGEWSTAIEDGKVVAILRLLSTEVTAL
Ga0181377_10012766	F009463	N/A	MDKLQLTDILEGDYSKDIHVTNDTAMYDPLNEDGENQDGTLKYTTEIDGRKYKITFDVNKNPTKKGIKVKFFPLDESGIEIPNPSEEQLAQLQNDVATRLAPKFNQFKLEFDEDEDAPEKNVAAFQVPLSSFVSFVANVVFKK
Ga0181377_10012767	F013249	N/A	MAKRKLLNLRVIGNSKELLNQFISNNKEYIFKETYAGIKHAIRQNKSIAEICNVNTNSATAIISKDGWESALSSSLGYFESVDKFEMCRDINTTLKTLRNVKRPTKFSKTISGSVVTS
Ga0181377_10012768	F012129	N/A	MSKDPLNSLKQSLDQLLQADTSIKRKNKKSYDQKRDLFINVINQFEAAITKSYLLEKDFKIDMSKYEENFYQIIDSLILLSFGKEVYELLSFYFYERYNPDGSENGLIIEETGEEIFIKDALELWGLIIKVQPDIFDGKIR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181377_1001276

Overview

Ecosystem & Geography

Associated Families

Sequences