Scaffold Ga0181377_1001250

Overview

Basic Information

• Taxon OID: 3300017706
• Scaffold ID: Ga0181377_1001250
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8311
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (26.32%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -29.499
  • Long. (^o): -71.609
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054361	Metagenome	140	Y
F072850	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181377_100125011	F072850	AGG	MKLNELEILEDDFDLFVALDDSDKIEFLFDATQIGMEAAIIKQVARLTEKYQMREPIVQVTDYEVGPYRISVTEYPDKLHINSNSLRAIKRFVEKLWNDGTLLRRVKEKKTEFDIYKYLRVYDVIGKVPPICSN
Ga0181377_10012508	F054361	N/A	MGYVNNTAQYDQKKVKKYGKLYGSIDFEVNDNLSTYNFENKEAPVVGKLHIGNKAFEVTYQELDMIARTMNTSKDIVNRKYKMGMMR