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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017706 Open in IMG/M |
| Scaffold ID | Ga0181377_1000401 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16402 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (85.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Subarctic Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -29.499 | Long. (o) | -71.609 | Alt. (m) | Depth (m) | 12 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011403 | Metagenome / Metatranscriptome | 291 | Y |
| F011589 | Metagenome / Metatranscriptome | 289 | Y |
| F095513 | Metagenome / Metatranscriptome | 105 | Y |
| F105298 | Metagenome / Metatranscriptome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181377_10004011 | F095513 | N/A | LGYIPIQTVYNAQKVYNNVGSTIIQDVSQIQRSIYGDMAEIYSAITYGSHPTLIVDSTTDQLNDGMVGAEPGSVIRVEASLTGTPSYVYEFASPQLDAIDSIKTLVDSKIEKLTQIAMLRSEDLIKSSRSGEQIEVYDDKLAALIRKKATNLENAEDKLWNIWFDWTNMSKPQDFGVSYNRQFNKKALEHELSEINLSMNVLEKYENMFNTGPEEFNTAEAAEARAIELGGSGFHSHADQEGNVIYMPFATHDAFEQATGQSADAEFKNEMRDKIRMRLTQLLSATTTNAGF |
| Ga0181377_100040119 | F105298 | GGAG | MSGRLLDFKSYVGGADNVQVIEMFPTTQKTFTYNYAANISLYNFEADYQTLVVDSLAYDRITGDPNFTDSNIIGSFAKVEVGNANIVVTDAAVGTVDFTIPAQRYTGNITPSARTNVPITVVGFTWTNTEVTPNVTETHRWAVVERYEPDAPIGNVLASTGFVALT |
| Ga0181377_10004014 | F011589 | GAG | MAFITVTGNVVSYAEALDVRDKDQRLFEANELDFTNVPDTPGNLDNYIEDLTTKATDRINQKIRASARWREYLNARGSGFSNDNIPAFNPNLILSRKADVTDMCCYYTLKEYLLPKIADFGNPESSEVQKIQYYDNKFNDIFSELLDMWDWYDFDSDGTVESGEKMVSFQLNRRSRGRKAVTRVR |
| Ga0181377_10004016 | F011403 | AGGAG | MAIINVSAGSEAVLFLGDSAANANIAGASGLSIPRMQDITLNNSTGVFRFKTLDNTAESAVTTPATNQITLNVVVDDAAFFGTGAAVDTVVSTGLFGCSKNKTRVFFNAGFQGTDSGSKFLSGSGFISGLAPTVNMDSPVWVTPVTIEVDGDFANSAVS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |