Basic Information | |
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Taxon OID | 3300017706 Open in IMG/M |
Scaffold ID | Ga0181377_1000334 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 18102 |
Total Scaffold Genes | 34 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (55.88%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Subarctic Pacific Ocean | |||||||
Coordinates | Lat. (o) | -29.499 | Long. (o) | -71.609 | Alt. (m) | Depth (m) | 12 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001166 | Metagenome / Metatranscriptome | 760 | Y |
F005026 | Metagenome / Metatranscriptome | 414 | Y |
F026871 | Metagenome | 196 | N |
Protein ID | Family | RBS | Sequence |
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Ga0181377_100033430 | F001166 | GAG | MATEVGENVQVKANLAFMAKVIAIVGTAVWGYSVIWNKINELDNSLGRVQHEGTLLGDLSARMMHLEKFAEQAKADLDHLVEMQDSPITSDYQQFERLNYLEKELDRLRDKVEE |
Ga0181377_100033431 | F026871 | GGAGG | MEISHYMFAGVGVAISILAFFIKRNKWEIDDMKERLRQIEISDAGQSKDIEHLTKLSEDRRRDIQKLFEKLDAK |
Ga0181377_100033432 | F005026 | GGAGG | MGSILKGVFGMLTDSRQQKYEIEMAREARNNEFAIKFQESLNSGDGGAFTRATRRMLALIGMGTISFVTCITAIYPSVPLLSTTNITGEGKSEILFGLLSFPTEQANLVVTTGHLCLFQTSVVLPMIVGFYFTPGGRR |
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