Scaffold Ga0181377_1000334

Overview

Basic Information

• Taxon OID: 3300017706
• Scaffold ID: Ga0181377_1000334
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18102
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (55.88%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -29.499
  • Long. (^o): -71.609
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001166	Metagenome / Metatranscriptome	760	Y
F005026	Metagenome / Metatranscriptome	414	Y
F026871	Metagenome	196	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181377_100033430	F001166	GAG	MATEVGENVQVKANLAFMAKVIAIVGTAVWGYSVIWNKINELDNSLGRVQHEGTLLGDLSARMMHLEKFAEQAKADLDHLVEMQDSPITSDYQQFERLNYLEKELDRLRDKVEE
Ga0181377_100033431	F026871	GGAGG	MEISHYMFAGVGVAISILAFFIKRNKWEIDDMKERLRQIEISDAGQSKDIEHLTKLSEDRRRDIQKLFEKLDAK
Ga0181377_100033432	F005026	GGAGG	MGSILKGVFGMLTDSRQQKYEIEMAREARNNEFAIKFQESLNSGDGGAFTRATRRMLALIGMGTISFVTCITAIYPSVPLLSTTNITGEGKSEILFGLLSFPTEQANLVVTTGHLCLFQTSVVLPMIVGFYFTPGGRR