NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181377_1000334

Scaffold Ga0181377_1000334


Overview

Basic Information
Taxon OID3300017706 Open in IMG/M
Scaffold IDGa0181377_1000334 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18102
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (55.88%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-29.499Long. (o)-71.609Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001166Metagenome / Metatranscriptome760Y
F005026Metagenome / Metatranscriptome414Y
F026871Metagenome196N

Sequences

Protein IDFamilyRBSSequence
Ga0181377_100033430F001166GAGMATEVGENVQVKANLAFMAKVIAIVGTAVWGYSVIWNKINELDNSLGRVQHEGTLLGDLSARMMHLEKFAEQAKADLDHLVEMQDSPITSDYQQFERLNYLEKELDRLRDKVEE
Ga0181377_100033431F026871GGAGGMEISHYMFAGVGVAISILAFFIKRNKWEIDDMKERLRQIEISDAGQSKDIEHLTKLSEDRRRDIQKLFEKLDAK
Ga0181377_100033432F005026GGAGGMGSILKGVFGMLTDSRQQKYEIEMAREARNNEFAIKFQESLNSGDGGAFTRATRRMLALIGMGTISFVTCITAIYPSVPLLSTTNITGEGKSEILFGLLSFPTEQANLVVTTGHLCLFQTSVVLPMIVGFYFTPGGRR

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