Scaffold Ga0181377_1000141

Overview

Basic Information

• Taxon OID: 3300017706
• Scaffold ID: Ga0181377_1000141
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27883
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (84.21%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -29.499
  • Long. (^o): -71.609
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020815	Metagenome	222	N
F028349	Metagenome / Metatranscriptome	192	Y
F032993	Metagenome / Metatranscriptome	178	Y
F044198	Metagenome	155	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181377_100014115	F044198	AGGAG	MQPKNVPCHIRIKVAPTQQQKGRACRLHGKDFKSIADAARHWNVNYSWAAEQVSKGWNKEGFPQKYRKSYV
Ga0181377_10001412	F028349	GAGG	MKVRTYHKNGKAVQFLGYSDIDASNAAKVVMGEVGDVGYFKPRLGTDEWIYDWTYVKELTDADLMEELGR
Ga0181377_10001414	F020815	GAGG	MRLYMNKQGEWVGTQAAARKIDASMVDVPTDKPNLLKWLNTFTGAIDDAAKEVIDSKPKTRTVTQKAHAWETIRECAQKASIDDMTVALAVYMDRVQDIADKQKETQQ
Ga0181377_10001419	F032993	GGAG	MQINKYTESLPNMEVPQLPVSMLQHMEQMGLLPVSHEDDGVNNLDMQWRSEANYFRRDVLDENNQPLF