Scaffold Ga0181372_1011663

Overview

Basic Information

• Taxon OID: 3300017705
• Scaffold ID: Ga0181372_1011663
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_08 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1563
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.1
  • Long. (^o): -70.419
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005620	Metagenome	395	Y
F014071	Metagenome / Metatranscriptome	266	Y
F067209	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181372_10116633	F005620	AGGA	MTEEEKFTKQIETFKTFCKNNRLRLREDGDGLPVARAIGKFKDDQFFCNFKDGTIGVYVTRETQRQFTYLNKKLVKMGCIPTQLGDFEAAYDLEWMNIPPVAKLLKIKKGAAKVKDPKWLRD
Ga0181372_10116634	F067209	GGA	MDPLDEEAKMSMTEWVTKFGDGRDHNETAELAAKFMFAMSYYHDRMKLHIMLHPLFFVAGFLTAYYFSGQ
Ga0181372_10116635	F014071	GGA	MAKRPGRLIDQTFTSFTEASGRLEDTIGWVTKAKDLAHEFEPGCKAEVTLHLLEEVLEKAGRELDRASTELAMEVFEKXAKKKTEIIIKSSAFS