Scaffold Ga0181372_1010271

Overview

Basic Information

• Taxon OID: 3300017705
• Scaffold ID: Ga0181372_1010271
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_08 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1687
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.1
  • Long. (^o): -70.419
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005547	Metagenome	397	Y
F059942	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181372_10102711	F005547	N/A	FSSVHFTQKGCALACIADITEFHGIDDDETALSVMNNTYHGETEEYTEPIEWDQEKLKEMSSKDLWKIFADWCEMSWDRMADRNYNIDAQSMEMQA
Ga0181372_10102715	F059942	GAGG	VKVGDLISFKPIGFGLEDWSNPSIVLEEYEAPNDGLWVVWVDDMRCVVDETNYEVMYLDKEALNESR