Scaffold Ga0181372_1009562

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181372_1009562

Scaffold Ga0181372_1009562

Overview

Basic Information
Taxon OID	3300017705 Open in IMG/M
Scaffold ID	Ga0181372_1009562 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_08 viral metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1762
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-20.1	Long. (^o)	-70.419	Alt. (m)		Depth (m)	85
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016271	Metagenome	248	Y
F021394	Metagenome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181372_10095621	F021394	N/A	QCNVDYIGRTKVKCYSFTLGKKVNIELNLKTLVFVS
Ga0181372_10095625	F016271	N/A	MGISQKIAVLFGKRHEIEKEIAKLQKSCKHSIKSVKQVRERVDSSTPIIRYVCDKCSMVLGYPNQQDKDEFLKE

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