Scaffold Ga0181372_1007017

Overview

Basic Information

• Taxon OID: 3300017705
• Scaffold ID: Ga0181372_1007017
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_08 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2113
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.1
  • Long. (^o): -70.419
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004163	Metagenome	450	Y
F012625	Metagenome	279	Y
F022314	Metagenome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181372_10070172	F004163	AGGAG	MKKTLQQLKGIVLDLKQYFEKSLPLILIGVALGYTFAQHLAAQTPKDIGFATVEDMSFLVQELKDCRDNSGSLDGSY
Ga0181372_10070173	F022314	GGAG	MGGIDKLKLGDMVRLVSHEPPEDPFHSFSTEQIDKMGVGLVVSMEELNSYKDTPEKKWVEYTILWSGLGEQLKHLGFDLIKITGEKK
Ga0181372_10070175	F012625	GAG	MDPVHNKEISVGDLVKEHTKGSKGRVGLVYEVISNYYLNIKWLDGSVDKRHRNKYEVTKFINGEYRDILQEYIRGKRW