Scaffold Ga0181372_1006929

Overview

Basic Information

• Taxon OID: 3300017705
• Scaffold ID: Ga0181372_1006929
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_08 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2130
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.1
  • Long. (^o): -70.419
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018286	Metagenome	236	Y
F053548	Metagenome	141	Y
F070089	Metagenome	123	Y
F079212	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181372_10069293	F018286	GGAG	MTYLTTFILVGMIDSYDPYFATVELSTTPASNGGPAVAVMPVSVFPCEIYEGKVFYVVKLHEEQDASIVCQKEEKSEPRREKTD
Ga0181372_10069294	F079212	N/A	MPPLFVKRKKRVNPDERKLIDRCIESHYNMIRFHRRAIIELSRKTIKESEMCTECFDFEIINESGRSGKSEE
Ga0181372_10069296	F070089	GGAGG	VKAGDLVKFDSDLESDVFEANPRTEHGLVIQISKTGHDTVSAQVLFNDGETWWVDSGRLEVVSESR
Ga0181372_10069299	F053548	N/A	MKDSGAPSTGDLVAALYDEERDISCVGLVTETKGIECKVLWSSESNPIGWWQRSKLKVVSPSGPPKKFNALNIHLT