Scaffold Ga0181372_1006631

Overview

Basic Information

• Taxon OID: 3300017705
• Scaffold ID: Ga0181372_1006631
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_08 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2188
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.1
  • Long. (^o): -70.419
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004879	Metagenome / Metatranscriptome	420	Y
F099431	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181372_10066312	F099431	GAGG	MKQLKKDTLKNGDVFNISFLPRGDDSVARHQWQTSFRQAKWITDNPNQNCFTAKCKNKPHSYLKFWDMTKDAMRTASTEFASVFVNINGESYIYRGEDD
Ga0181372_10066315	F004879	GAGG	MSKSNELKLFQREHFTDKIEKKLTPEIEREELKIKTTINQILNKGIKSFSKSIGADKVIARLQQAEEEKREASRLAYSFFNNKASSVVSYSKAKEYKFDRDDKDTISVNDCTKQLEKWAEKQAEQYAETTPQGQRLAYLRALQTKAKDLVAEASVSDELKASLDNLFQFVGVSWEQKLPALPKPKAK