NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181372_1006631

Scaffold Ga0181372_1006631


Overview

Basic Information
Taxon OID3300017705 Open in IMG/M
Scaffold IDGa0181372_1006631 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_08 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2188
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.1Long. (o)-70.419Alt. (m)Depth (m)85
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004879Metagenome / Metatranscriptome420Y
F099431Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0181372_10066312F099431GAGGMKQLKKDTLKNGDVFNISFLPRGDDSVARHQWQTSFRQAKWITDNPNQNCFTAKCKNKPHSYLKFWDMTKDAMRTASTEFASVFVNINGESYIYRGEDD
Ga0181372_10066315F004879GAGGMSKSNELKLFQREHFTDKIEKKLTPEIEREELKIKTTINQILNKGIKSFSKSIGADKVIARLQQAEEEKREASRLAYSFFNNKASSVVSYSKAKEYKFDRDDKDTISVNDCTKQLEKWAEKQAEQYAETTPQGQRLAYLRALQTKAKDLVAEASVSDELKASLDNLFQFVGVSWEQKLPALPKPKAK

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