Scaffold Ga0181372_1000905

Overview

Basic Information

• Taxon OID: 3300017705
• Scaffold ID: Ga0181372_1000905
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_08 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7140
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.1
  • Long. (^o): -70.419
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F099989	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181372_100090514	F004771	GAGG	MKVGDLVRMKTHDTGHVGIVVERHARWKATLLYGDSAQIGIKWFDGSGKTDWEPEAWLEIVSESR
Ga0181372_100090529	F099989	AGG	MKVGDLVKVIYDGTLGLIVRIEEDGYGDWAHLHTGESFKIDWLEVIHESR