Scaffold Ga0181371_1082538

Overview

Basic Information

• Taxon OID: 3300017704
• Scaffold ID: Ga0181371_1082538
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_07 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 521
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.1
  • Long. (^o): -70.419
  • Depth (m): 160

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010950	Metagenome	297	Y
F018286	Metagenome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181371_10825381	F010950	N/A	NIWVVRQTCLYDHDTYFTSHMTENGAFITAIKTVREDLTSDFDEDEIEDMRPGMPHHPEEDLMQYDRKQLQRIVQDWWEYSWDMNEHAQYQIHQTQAQG
Ga0181371_10825382	F018286	GGAG	VGYERTRTISDTPDTGARMTALKVFILAGTIDSHDGQFATVELNLNPAMNGGPAVAVMPVAAFPCEIYEGKVFYVVKLSELEDAVIICQKEKP