Scaffold Ga0181371_1028889

Overview

Basic Information

• Taxon OID: 3300017704
• Scaffold ID: Ga0181371_1028889
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_07 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 913
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.1
  • Long. (^o): -70.419
  • Depth (m): 160

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035967	Metagenome	171	Y
F042574	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181371_10288892	F042574	AGG	MKVGDLVKSAFTFFEGQLGLIVATDVWDEAVRGKWHIVKLLCNGEERTLCEFDMKVVRECQENVKSDEPALTTPSERDTL
Ga0181371_10288894	F035967	GGAGG	MIKVGSLVKMKWGYSSVGVVTKVFDNPYGGHIDDVDPPQMASIVWTDDAKSRERVADLKEAIDESR