Scaffold Ga0181371_1012445

Overview

Basic Information

• Taxon OID: 3300017704
• Scaffold ID: Ga0181371_1012445
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_07 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1441
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.1
  • Long. (^o): -70.419
  • Depth (m): 160

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015347	Metagenome / Metatranscriptome	255	Y
F020384	Metagenome / Metatranscriptome	224	N
F024807	Metagenome	204	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181371_10124451	F024807	N/A	MKSVKPHLQHTGTRMTKRMLPFNLVYHDKDQQLTLALHDNPVTLTRDEVDGLIFHLDSFLFDMDRERKPQRSAEGVDHGKPQPSAEGADIHAEVHGEMLMAQYDDDPNPYHGDYSED
Ga0181371_10124452	F020384	N/A	MHHNKFHSYQKSLQKLRNIVSETLRSSGQGRQIEFDNQMRRAIRHIQIIKRNAPPDANGDLAMVEAYKLYDRLQRLSEYPTFFVDNTRKNPGRVSSDRGRPSSVRWDVAAMMAAPKGGPDRNWWRPPPRPLPVKHYTREELENEYPAFTMRKEREDAT
Ga0181371_10124453	F015347	AGGA	MLLESASEECKSMHYDMKEDAILPDMDTIYSAAEEMRRFADRLNNFADELMIVYRKMDHHQAMIDLDDLRNESYAH