Scaffold Ga0181367_1015618

Overview

Basic Information

• Taxon OID: 3300017703
• Scaffold ID: Ga0181367_1015618
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - ?Lowphox_02 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1392
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.099
  • Long. (^o): -70.892
  • Depth (m): 160

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023716	Metagenome	209	Y
F105880	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181367_10156182	F105880	GGAG	MRIRKRIVRVAISFLSMFLSPKEAEELMEELREVATGHKENN
Ga0181367_10156184	F023716	GGGGG	MKRREGWDTLVPQLSRVPIDAPVDGHIEGVPTQGEPIVKVGDLVKFIMPDDWDHHAIEVPIFTDEPALGVVRSINWMLISTNKGDCYIPEAEVYWSLTEKITKHTHDSLEVINAVQGG