Scaffold Ga0181367_1013507

Overview

Basic Information

• Taxon OID: 3300017703
• Scaffold ID: Ga0181367_1013507
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - ?Lowphox_02 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1500
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.099
  • Long. (^o): -70.892
  • Depth (m): 160

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008649	Metagenome / Metatranscriptome	330	Y
F035803	Metagenome / Metatranscriptome	171	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181367_10135072	F035803	AGTAG	MKEKNKRMKEMTKLTFENVPQVTYWRNPNSGVIYHCSIFRNTWVESDEFEDGGYSYDTEKHWINISSINTKVERTYYYTWDELVEKFEFLCTSDGVDEDYYVNILANKRLYREFRYCKDRLPRLRRLMKSEPDSHWLDDYDEMVANVEKYNNLETFELEF
Ga0181367_10135074	F008649	AGGAG	MTELETLMLDVTNTLNHNGFDEVKAVPNNTQFSIRVGYWDRISASLIETMEQYHSIRITETDWEDEDCGTLYRYLVEVVDEDCGYTIDELNELDSYTEEAMYLESVGIDDDVEWGVA