Scaffold Ga0181367_1011649

Overview

Basic Information

• Taxon OID: 3300017703
• Scaffold ID: Ga0181367_1011649
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - ?Lowphox_02 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1613
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.099
  • Long. (^o): -70.892
  • Depth (m): 160

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027653	Metagenome	194	Y
F071324	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181367_10116491	F027653	N/A	DKSFKKLYDVIESIEEGGYLDKLKGVFKRVSWLRDEEIYPSIPNVDVFVNWLMDIKEHKYFDKFNYYLFGGFISWPEKTKDIDILITKRDGQFASLKELEQLMGDMFDSAYDNHRFYLDSCYMRIPQWIADYPRNKEILKSAEKKQLFTTITKYKPEYMVKFKRYGKLNCCYMGTWEKFWKDKDSESEMIHRWVDLNGDYARMVDLRRIIKYYEDENKERNIENFLNEFQEYSGY
Ga0181367_10116493	F071324	AGGAG	MISFIIPFSTIEKDKFLNLNEKEDLWEENDSANIIYSTIKTIKNINSLKCEKEILLVDNSHTWPEVDLPNVRVIKGWQALPLKELEK