NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181367_1005924

Scaffold Ga0181367_1005924


Overview

Basic Information
Taxon OID3300017703 Open in IMG/M
Scaffold IDGa0181367_1005924 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - ?Lowphox_02 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2266
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.099Long. (o)-70.892Alt. (m)Depth (m)160
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016597Metagenome / Metatranscriptome246N
F029557Metagenome / Metatranscriptome188N

Sequences

Protein IDFamilyRBSSequence
Ga0181367_10059242F016597AGGAMSDANTVPYTWNGTGNFGSNPFASTTGNADYGLFFTPREMELFNDYNTELLGIIAQTGINYYRIEPDSSDPNSIYGESEVKVTRDPVQVYCWVMMDEPETETNSFTVDVRRRIELYMHKDRLTELDLVPRMGDFVGYDNQYFEIQRCSVPNFVFSYPQTKLGVIARCMSVREGVFDPDRDFVNKEYVGDSENPY
Ga0181367_10059243F029557GGAGMATPSNTHQKSIEFDEVTLLSIDKAVYDWFNTKHATNIQGRKVPVMFGGWERFAQMQDNKQDDNLNRMRDPSGMLILPLISIRRGDVTYNVDRFVFQQADGSPRVQISRRVAMSNFDANERV

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