NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181374_1073084

Scaffold Ga0181374_1073084


Overview

Basic Information
Taxon OID3300017702 Open in IMG/M
Scaffold IDGa0181374_1073084 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_10 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)575
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-29.499Long. (o)-71.609Alt. (m)Depth (m)230
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F101302Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0181374_10730841F101302N/AVSISFRKKEETYGGPTEKKTRLEESPALFHHWGGTTFPKFAFDWFKVLRKHLKKNHTGSDPLTRLEPRNLMVQFINAIRDEEDFRLHRYENKTKDIRGGTWSIDDNLLSYSIYLGKDGQDGDNSDNGHYTIDVDTGKMYNDKGESIA

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