Scaffold Ga0181374_1060580

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181374_1060580

Scaffold Ga0181374_1060580

Overview

Basic Information
Taxon OID	3300017702 Open in IMG/M
Scaffold ID	Ga0181374_1060580 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_10 viral metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	640
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-29.499	Long. (^o)	-71.609	Alt. (m)		Depth (m)	230
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004163	Metagenome	450	Y
F024415	Metagenome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181374_10605802	F024415	GAGG	MQIKAGDLVKLHPEFRHTNLIEGNPYHATGLGIVVRAKDKDTPPVTYVKEYHVFWHESGERTINAYASLVKLSGEEEK
Ga0181374_10605803	F004163	AGGAG	MKQTIEQLKKTVIELKQYFEKSLPLILLGAVLGYAFAQHLEAQQPDTVGFATVEDMSFLVQELKDCRDNAGTLDGSY

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