Scaffold Ga0181374_1026506

Overview

Basic Information

• Taxon OID: 3300017702
• Scaffold ID: Ga0181374_1026506
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_10 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1020
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -29.499
  • Long. (^o): -71.609
  • Depth (m): 230

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014552	Metagenome	262	Y
F042083	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181374_10265061	F042083	AGGAG	MARRKPAMPHPSITGMAAGLSVAQYLNQGSALSTKTGVITDIVGGDLQGAFQELSGNAIDLATSTKGKQVLTSAIVLATAGGLARKFFPSVKLGGTRLY
Ga0181374_10265063	F014552	N/A	MSLAKDMKYSLGTPSLMRGLEKGQEAEVKFLTDPKPVETEHGSKFDIQVLLLSHPHPDYSSLEKKGKRLTWRTNCHVVRVTIQDLFEHAVEDFMKDWYELTWTISCREDGNIWVEA