Scaffold Ga0181374_1009005

Overview

Basic Information

• Taxon OID: 3300017702
• Scaffold ID: Ga0181374_1009005
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_10 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1824
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -29.499
  • Long. (^o): -71.609
  • Depth (m): 230

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027156	Metagenome	195	Y
F029400	Metagenome	188	Y
F084099	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181374_10090055	F084099	GAGG	MKIGDIVTMNTPLTPERYGLGLIQKILRSREKSYRLVYHILWPDNTISCQFDNEIVLVGRVE
Ga0181374_10090056	F029400	GAG	MKIGDLVTFCPESWGTPLEDRPLGVVVNMESLKNVHPMVTAIFPGDDIPYSSMIEDFEVVNEDW
Ga0181374_10090057	F027156	GGAG	MMPKVGQLLRWYDNFTFDDDGPNHDVGIVKEVQLEGENFFGNDEYQYVVVVDWCKGPHHSYHDQEEWEESIQTNEIVVVV