Scaffold Ga0181374_1007291

Overview

Basic Information

• Taxon OID: 3300017702
• Scaffold ID: Ga0181374_1007291
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_10 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2040
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -29.499
  • Long. (^o): -71.609
  • Depth (m): 230

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004906	Metagenome / Metatranscriptome	419	Y
F036272	Metagenome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181374_10072912	F004906	AGGAG	MATTKKETKKTDARDALDSNEESELTAIAVKSLTNLEEKVEAIDWKLWEIYNIVKTYVETNPGGGVSAPQVSQPQASAADIAGEIAKALGNTAPEEKKSVVGKLFGK
Ga0181374_10072913	F036272	N/A	GEYVTSKLPVGVWDFKSGYDDITFDISGNGNHSKFYNVGFANKSLKSNSERYLPYRRNGAYGYLSSEEQYLNLENLMRSEHPEIMTNRNTFNKKVRLSMSDTDKDGISSTKFRIVNRKDYQGKHEIIEVVI