Scaffold Ga0181374_1002097

Overview

Basic Information

• Taxon OID: 3300017702
• Scaffold ID: Ga0181374_1002097
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_10 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3894
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -29.499
  • Long. (^o): -71.609
  • Depth (m): 230

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011408	Metagenome / Metatranscriptome	291	Y
F100974	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181374_10020971	F100974	N/A	ISPDNASIEIVQTYSWANYGGTWAASSDNWDNANFIPTAVETGQNQPDAGSLTLTGLVPTFQLSQLWYVPSGSMALTGFVPMSTSGHVFIPDSGSLSGFGGGALWDDGTGDWASHSEAWGFGTLTPTAGVTYTFTIDAAGNLVFTPYDPAWPLVSDPTYISEVIIS
Ga0181374_10020975	F011408	N/A	MRMDYYDPTDVNLDELITRVRVGRSTEELLRTPTGSSLVSRATQDYREGIEALQKMAMQEWAGSSEEELQQYRKISNNLATPLKLLHWLDAILNDGENAESIARYKDAGEI