Scaffold Ga0181364_1028139

Overview

Basic Information

• Taxon OID: 3300017701
• Scaffold ID: Ga0181364_1028139
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 913
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020665	Metagenome / Metatranscriptome	222	Y
F021063	Metagenome / Metatranscriptome	220	N
F022371	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181364_10281392	F020665	AGAAGG	MKKKTRDIKLVKVEEFKAAKIIVEVDDELFEAMAQAGRKHIAKDKVACFSYALNKALLELCEEVK
Ga0181364_10281393	F022371	AGGAG	MLCLLELKDIVWVIGWFILYSWLILSAIYCAGYIILKLIDFIKKELEL
Ga0181364_10281394	F021063	AGG	VRSTQLCRGDYDDRVQQLAGEVALQAIRDLRMLRKRGMVKGMKIIKDHQGVPLNGALEYKNSHEVQKLLRDFKTGVVSWWCRASGVRIDNRTLLRKLQENDYALPT