Scaffold Ga0181364_1023865

Overview

Basic Information

• Taxon OID: 3300017701
• Scaffold ID: Ga0181364_1023865
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1002
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039104	Metagenome / Metatranscriptome	164	Y
F045761	Metagenome	152	N
F095138	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181364_10238651	F095138	N/A	QMGMVATEMTEALFLSYDPRMPHGKKLTQTLITLEEDIQEIIDEKLASAGELFLSITK
Ga0181364_10238654	F045761	N/A	MAILFAITLLQLHKTTEREDELLEKLSNKNRLIWDYETELVEIRSKIAEANDRAKTWELQATFLKELQDDKPKSTRGKSVNK
Ga0181364_10238655	F039104	N/A	MTNLKALVVRASINEIIKWRVYFAGELLATFENEGDAR