Scaffold Ga0181364_1006990

Overview

Basic Information

• Taxon OID: 3300017701
• Scaffold ID: Ga0181364_1006990
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1937
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011646	Metagenome / Metatranscriptome	288	Y
F018703	Metagenome	233	Y
F022400	Metagenome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181364_10069901	F022400	AGTAGG	MVLYQVGRQRKMRRTTTERSQRTTLRLVSGGVGERASAYSPFGPVRAGLITTQRTSEDQVLTELLNSLERKIAELSIRSCEVLNIFLSDTKHLVRHTNSFSNTDTTDSI
Ga0181364_10069902	F018703	AGGTGG	LSKTERRIETAKAQAVRQRNYRRARDRALARLGNDYPNVYRAYLEEEIEADEKMGKKWLDITGNTKSARSRAR
Ga0181364_10069903	F011646	AGGAG	VSNVLELRNGTVKRTIFYEVSDAQNIAIWGGESPSEALKWYRESPLDSKIYVQEWLTDEEDAKEVSPQIEITSIVLSTIANCMERWRN