NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0181364_1003373

Scaffold Ga0181364_1003373


Overview

Basic Information
Taxon OID3300017701 Open in IMG/M
Scaffold IDGa0181364_1003373 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2832
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000468Metagenome1102Y
F028508Metagenome / Metatranscriptome191Y
F033720Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0181364_10033732F028508GAGMIRIHNTETDEVIDREMTAAELKQYEANQAENAIAKAEAEAKATAKAAILERIGLTADELKTILG
Ga0181364_10033734F000468AGTAGGMTAWSPDWKLTVAGVDYTDIAISDIQHQAGRTDIYQQPNPSYLQITFVALTGQTLPFDINDSLSLQVKDTSAAYVNIFGGDITDITVSVGATGSNATVIQYSVLAMGSLVKLAKELYAGTISQDEDGDQIYALLSSVLLGSWNDVPAATTWSGYDATETWADALNLGLGEIDQPGLYTMENRAADADTIFNIAQLIANSAFGYLYEDNEGNIGYADADHRQTYLLANGYVDLDARHALGQGLSTITRSGDIRNDVYINYGNNFGSQETATSASSIATYGYKAENIQSVLHSAVDAQAVADRYIAQRAFPQPAFQSITFPITNPEIDNSDRDNLLGVFMGQPLNLKNLPDQISGGEFEGYVEGWSWSTRFNELFITLNLSPVAFSQFSMRWNTVPIGEAWNTLSATLTWEYATIVS
Ga0181364_10033735F033720N/ARLKVGFDEAKESLGTALLPQVEKFITFLNDTAVPALNAFIAGFTGDAGLNAALSETQQGAASFGRTIATISGIISGFITFLREAIGLVVSLANEFIKIVNIIPGVNVGALPNPAPSAGRSSLPTVPRGGSNFTYGSGNPVNITVNAIDGEGAARAVAGVLNQSAARSQGLLVGGTVGK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.