Scaffold Ga0181364_1002180

Overview

Basic Information

• Taxon OID: 3300017701
• Scaffold ID: Ga0181364_1002180
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3483
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003784	Metagenome	468	Y
F009331	Metagenome / Metatranscriptome	319	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181364_10021802	F009331	AGGAG	MICDNCMKAGEENTLTHYKRASNWHDKCEYEGCVCQHKTGPGYVKREGSKVPLMQTQSP
Ga0181364_10021804	F003784	GGAGG	MYGDDRERVGHNATDFAAYGLSHLAPRQEESDNTHTPAANPLIDHAAVTGYRALGVSTEDLTSFIESFASLRAMRVKGVGHDQYSHAKGQKFESFTTSDTIRELIEELADASNYIDFLAIKLLNIQHTIDLVLPDCD