Scaffold Ga0181339_1003526

Overview

Basic Information

• Taxon OID: 3300017700
• Scaffold ID: Ga0181339_1003526
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.D.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2093
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 108

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072339	Metagenome	121	Y
F088508	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181339_10035261	F072339	N/A	TLTLEQTMQQNLNNLIWDAKHSAGTFSLTDKQKADILRMVGSGCRQNTKARLSRRLDVPLSCWESFGIYSRMTLDDKGADYICGQSWPDEMRTLRECILR
Ga0181339_10035265	F088508	AGGA	MKRIKLPDLNPTTRTYPRTLQEAFPQHDWESVDKTVDKVNPDDYLYLVALFSLGFLLGLLVSGS