Scaffold Ga0181339_1003215

Overview

Basic Information

• Taxon OID: 3300017700
• Scaffold ID: Ga0181339_1003215
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.D.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2213
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 108

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006110	Metagenome	381	Y
F007519	Metagenome / Metatranscriptome	349	Y
F022835	Metagenome	212	Y
F080867	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181339_10032152	F007519	AGG	MTTGIEYLKPEQQKKGRGLGKKPALFCTSLRLTKDVMDYFNTNFAYTKQAKMREVLTEYVNNQTGNKS
Ga0181339_10032153	F006110	GGAGG	MPRPKPPEKLIGRQVRMSDRHWLILQQLGGAQWLRELLDKKAPMPKKYYKGLLNDNRN
Ga0181339_10032156	F080867	AGGAG	MSMNTLSLSNVVVGEDLQKTMDKEGFKLSGVFNMLDPVVNRLASLNPLWTFVINTSGLGTNNNRVASGFIVKLDGEELGSIGLSYMGQRGKVIAICNDRIGKGRQRTDSYRTVDADKAILMAKKMFGKMNPNERISKAKDAAERVVSRASWNKERDRTMHQGNIKNEMLVWAETKGNALFMEYLKVEAIPSLRHKVTTSMEKVELLDTEMKTIERVQQDFSKNKTALVVKDTGKYLVKIGDKVDLYDDNTLPVDMRMKIGMLKLVEDEQYLTDVGCKVSNEIFVLLVDELTNVSKGV
Ga0181339_10032157	F022835	N/A	ELLTKLNVTNDPKLEDARRQVELAMLGADIEEVKDSPVVRENLKFKVDAILGKFEW