Scaffold Ga0181339_1001794

Overview

Basic Information

• Taxon OID: 3300017700
• Scaffold ID: Ga0181339_1001794
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.D.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3147
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 108

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002287	Metagenome / Metatranscriptome	574	Y
F004838	Metagenome / Metatranscriptome	421	Y
F070805	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181339_10017942	F070805	N/A	VAARAFTAANPTTGVQRASTIQPMNGIGATIVLLSQAIPYIVSIIGTISATLVNNKITNKYNQNAYNVQALNNMSIAELNLQIQRLDMDIAASGGILKIINLMALSQFRMVYQQRFDRISGFGLLSNLPGWVLPAALGLGAYLLIRRK
Ga0181339_10017946	F004838	N/A	MTAQDKILHVANKLGLTSLQNMQASTGAVYDVDTDLGGQIFSNATRHQSPTITNLTDNQFEVNEALLIETIAFYVRDSAGNTLNFQKEYGSSAVIVFDLIIGNKRVMKSTPVFAAGMPYTFANTGSVVETSGETVITTLVPRHQVFMEGAGILIPPQIQWSVEYNVFNVQTGAIIVPTAATAIGCYLFGTKVLLNFNTSI
Ga0181339_10017947	F002287	N/A	MATQVQKLSYVDSKLGAPSAGQQTTRILFNTIEAPGTTSSLSFFRNFQGLSNGQTNLTQNKLDSMESMVIKTIYLAQFDNSVLQSFGGNVQQTLSIIVGNQQVVKNLPIQFNQGVNGQAYDRLHEAGGARADLAVGPTSTSQTLLPCEIRLLTDIVIPPQVAFEVRIDSNSAVYSAGAVVCALSGYGKIFSAGNSF