NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180120_10065011

Scaffold Ga0180120_10065011


Overview

Basic Information
Taxon OID3300017697 Open in IMG/M
Scaffold IDGa0180120_10065011 Open in IMG/M
Source Dataset NameFreshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1624
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)37.1043Long. (o)-76.1811Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032266Metagenome180Y
F054415Metagenome / Metatranscriptome140N
F093726Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0180120_100650111F054415N/ANQGDKMTQHSDKVEQQRELLKTEALDKKIISIDIRPGRIQTWYQSGRVVTEYPRDKRRKTTTDYRGFND
Ga0180120_100650112F093726GGAGMSYEIAEYKYIGHMRSVYGLKGELEYPSRKHSKEDSEGNWLLISFNGHKMGKVLTNGKVI
Ga0180120_100650116F032266N/AGVVFIDDAINLSHDELKKKFKEAVDKDEINHFEIQTRGKE

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