Scaffold Ga0180120_10057442

Overview

Basic Information

• Taxon OID: 3300017697
• Scaffold ID: Ga0180120_10057442
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1743
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 37.1043
  • Long. (^o): -76.1811

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024137	Metagenome / Metatranscriptome	207	Y
F031926	Metagenome / Metatranscriptome	181	Y
F061906	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180120_100574422	F061906	AGGA	MQIRIVDTFEWGHLVPKVEKGVLALALENAEENLTPNQPAEVIIYQTPEDDLE
Ga0180120_100574424	F024137	AGGA	MSNKLTTKLSTKVSMIVAELVCRVWKYGRSKYNGVSDFDYHITDLRSQYPNNLVYRDAVGVLPFYCKTNEVDDDFEKVSSIKLGDCNIRYQFNKEVKQIDKKDDNIEHLFGDPRVPMIRDLITQTQIRHNEPKSLRVLNFKREGKNVVKLHSK
Ga0180120_100574425	F031926	GAGG	MSLSCTVSNIQFDYAFNDAIKKASKSVGKDTTNFTNGIPNQTVLVFKTICCLPDEEINTRVIAEWYHKLFGVNISTTSTVRNMSRLSEYGLLDVVDNPHGKSWKYTWIKLTTAGRKLQKLFMGSASDWKDKPRLQLDRT