NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180120_10049627

Scaffold Ga0180120_10049627


Overview

Basic Information
Taxon OID3300017697 Open in IMG/M
Scaffold IDGa0180120_10049627 Open in IMG/M
Source Dataset NameFreshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1896
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)37.1043Long. (o)-76.1811Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020895Metagenome / Metatranscriptome221N
F046082Metagenome / Metatranscriptome152N

Sequences

Protein IDFamilyRBSSequence
Ga0180120_100496274F046082AGGAGMPDAYITLTQRMLSKSEINANKTVQQFLLEDFGMEYTDKFFENRNKLTVIGEYIDGEEANINFFRRSGRGDKMISIQKLGQYADAGNEIRLSSDAESLHDATRIYINVYTSGAEADAA
Ga0180120_100496275F020895N/AFLMMIVRGTTTMTVNAYEIILDIGGQESTITLDDTFPAIDDWASACSMAVLMAKHIHPELEVELVSVAEYEAEEYSDYGYIHEAPMAVQ

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