Scaffold Ga0180120_10032435

Overview

Basic Information

• Taxon OID: 3300017697
• Scaffold ID: Ga0180120_10032435
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2407
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 37.1043
  • Long. (^o): -76.1811

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005813	Metagenome / Metatranscriptome	389	Y
F006217	Metagenome	378	Y
F027536	Metagenome	194	Y
F029123	Metagenome	189	Y
F103094	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0180120_100324354	F027536	AGGAGG	MRVSKVVPIDRVLNECRRRADDAWWDGKDEEAKLHEQEVKLYEKDKEEGVLWVPNF
Ga0180120_100324355	F029123	AGGAG	MSYEVWFGKNGKWFGYHSFKHRMDAVRYELRYQSIFKDLTVEIRRREHASQ
Ga0180120_100324356	F006217	AGGA	MIELLLSVIEEPNQFHKYCMEKHEHWTGRAACVQELRHAQRKMEVEELRQFLKENPHYRYPGMALPNGRIKPLDVCWGSDKTYYIGSDKVKKEKC
Ga0180120_100324357	F103094	GGA	MTKKAPEKLNIEVSLSSENSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWQDDRAVTLS
Ga0180120_100324358	F005813	GGAGG	MKLYKNSNGVWAGTQAKARSFCGKDYTAVDVPVDKAGLLQFLNLHQVCSYTSNGKEDIEDKPNTYDKKAMSWFRWAHDCMCRGQYEDAKEMLRKGLIDDKEST