NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187310_16698

Scaffold Ga0187310_16698


Overview

Basic Information
Taxon OID3300017696 Open in IMG/M
Scaffold IDGa0187310_16698 Open in IMG/M
Source Dataset NameHotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 6. Combined Assembly of Gp0212723, Gp0212724
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterStanford University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5649
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hotspring Sediment → Yellowstone National Park Obsidian Pool Microbial Communities

Source Dataset Sampling Location
Location NameYNP, Wyoming, USA
CoordinatesLat. (o)44.428Long. (o)-110.5885Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063848Metagenome / Metatranscriptome129N
F076264Metagenome / Metatranscriptome118Y
F085905Metagenome111N
F087445Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0187310_166983F085905GGAGGVFPSSRLSQFDYVAMNAYWLNIRLKYFTDPMLYAVATGIWVINLMDDIDIAETGTQKNFEYGLIYVYSNSRIDTLFIVALTHYFNVKREREYYRSIPMDALQNVMKSLVDFMNDKLKILDKLKEKLDERVVLMMWNQLYIFVMGFLYGLYGRDAEAVFQQVVARHLLPYSILEVIRRYTK
Ga0187310_166984F063848N/AVAKKRRSVHDPTLSVIHYQEQLEKMAKAYEQSATRRNQRAVNGFATLKQVQQTVRDYLNEVSQTLKAPVIAQLGVEFLGVAMAYLKGSNEGYNSYALTGRVAQIATLKATDIINTTTLTCAQVGEIINGMLKKLSGVTTDPLTFTEDDGVCKATVANPLTKLSVASASTGYTVSLTDILKAKSPEEVLMGKQ
Ga0187310_166987F087445GAGGMSEYDLKRIFKMIPIDKRLALALDTIQEYQSIQSKFNNLLNGLAMNAPRVKEVVENARRNRKPIDRLADMFMDMMETMLKSKAMSLTDEDKAKLKEKLKEVMESEE
Ga0187310_166989F076264GAGMSAISSAIQNMVTGLQNLFVAMIELFGNAVNAIGNTLSSLAQPIGYLIGVLAVFGSLLAIIYGVFRGRSGVSGLIGGLRGFFSSFI
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