NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187310_16428

Scaffold Ga0187310_16428


Overview

Basic Information
Taxon OID3300017696 Open in IMG/M
Scaffold IDGa0187310_16428 Open in IMG/M
Source Dataset NameHotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 6. Combined Assembly of Gp0212723, Gp0212724
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterStanford University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6133
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Caldisphaeraceae → Caldisphaera → unclassified Caldisphaera → Caldisphaera sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hotspring Sediment → Yellowstone National Park Obsidian Pool Microbial Communities

Source Dataset Sampling Location
Location NameYNP, Wyoming, USA
CoordinatesLat. (o)44.428Long. (o)-110.5885Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049100Metagenome / Metatranscriptome147Y
F084461Metagenome / Metatranscriptome112N
F101504Metagenome / Metatranscriptome102N
F102725Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0187310_1642814F084461AGGMSFDLGSLIKNNKAILQTENGKIVLRISFDDLVSAMYNGLPEQSKKVVSITHDGKQIIISFDASILSGMVGIVAR
Ga0187310_164282F049100GAGGMEIRKLSKSEIENLKENLNHGGRKSKYDEYLKNMEVGDWIEIDEINRGVISRAGKRLNMKFSVHYINGKYYIERIA
Ga0187310_164285F102725AGGTGGMKINVYQKLPEPVEGKEYTITKVEQGKGAFGEYIRVTLEDNDKNQYSTALWVKDTVSAKSKAGAFAIALGNDPATWEGKRIKIISWTAKNRQIQAIDNATSTKKGK
Ga0187310_164287F101504N/ALIYFFENNYPFKSLALYTTYCTITKTTCIVIGNTGSGKSEMLNFLKLNFDKVLTLNTISQASLKQIATELNNFDGILFVDDIGAINTEYMRITTMATLTYLAYQHYLRRLDYQTNLEIKNFNASLIINLQPAVFDEIVSNTSFEANIMDKSYRYYNMRIPDNKPFQHPHIKELQHIKDKFENMKVDIDKQRVEALANNFMTFNSVVRRYKIVNNFVKLTAILNGHKTATSEDYNFVSKMLLNNIIESELLERKGFTSTFKFNVFLFNVMLMSKYYGNIFHYSKLKTYLNVSTKTIYNYAKANNVKIDNGYIIYDNERILKVLKHVI
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