Scaffold Ga0187310_13517

Overview

Basic Information

• Taxon OID: 3300017696
• Scaffold ID: Ga0187310_13517
• Source Dataset Name: Hotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 6. Combined Assembly of Gp0212723, Gp0212724
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Stanford University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6803
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga → unclassified Caldivirga → Caldivirga sp. MU80 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hotspring Sediment → Yellowstone National Park Obsidian Pool Microbial Communities

Source Dataset Sampling Location

• Location Name: YNP, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.428
  • Long. (^o): -110.5885

Associated Families

Family	Category	Number of Sequences	3D Structure?
F101502	Metagenome	102	N
F105516	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187310_135175	F105516	AGG	MPKALIRVLALGRLSLNLRTFRVTASERVSITSDGTVNCLGGGCGANGTFIILEAEHPNAKELYNALKGARVLKLEVEVRELPRQLLSRLEFLTGSTISDNATVRYTWRSLPSFEELALVLNDLNLG
Ga0187310_135176	F101502	N/A	MPPKPLIMSQVPKTPIIAFTVILALGLGIVVIGSTSPMKPGIGAVLVLLASIASAPIYAWLRHPGLLIAIELGVGVFLAIIIVNWLHGISPLTSLKWYYNALRALITPLTRFKP