Scaffold Ga0187310

Basic Information
Taxon OID	3300017696 Open in IMG/M
Scaffold ID	Ga0187310_12809 Open in IMG/M
Source Dataset Name	Hotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 6. Combined Assembly of Gp0212723, Gp0212724
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Stanford University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 6. Combined Assembly of Gp0212723, Gp0212724

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Stanford University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10584
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (66.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

10584

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (66.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Sulfolobales → Sulfolobaceae	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Sulfolobales → Sulfolobaceae

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hotspring Sediment → Yellowstone National Park Obsidian Pool Microbial Communities

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hotspring Sediment → Yellowstone National Park Obsidian Pool Microbial Communities

Source Dataset Sampling Location
Location Name	YNP, Wyoming, USA
Coordinates	Lat. (^o)	44.428	Long. (^o)	-110.5885	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

YNP, Wyoming, USA

Coordinates

Lat. (^o)

44.428

Long. (^o)

-110.5885

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F089165	Metagenome / Metatranscriptome	109	N
F094113	Metagenome / Metatranscriptome	106	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0187310_1280911	F089165	N/A	MIVKKGEEKREITYTYEDLKSGYGNLYTLYNAIEFANNKVQLTSAKTVEEKDIFDVINQVLQMQRSLSSEATPNDILNTFKIFSELLKTITDPKTIEFLRMIGTKLGGEKA
Ga0187310_128093	F094113	N/A	MSVVLSTRIRHEIKGKTVLATLESLYQLYTRCHVARNYSDVVEKSIEEMKNEDKISFQNLLFCFVRKANTFTFPVMRDWKKRSEFLLIHYEFLPADYDYNNWEKHFEFEEYVEYKLNSIPVKKIISPPEIKTVMLTQKEKEFIMKLKKDFNYNTIDDAILHVLQNSTGWKMISFITRLLNEDITLTEIDKMLGDLGDFIFIFAEQKNDEDEIKIVAEFYPIVHTVELGKIIEVSKK
Ga0187310_128095	F089165	N/A	MTVKKLEEKKHEIVYTREQFEKKYENLYTLYNAIEFAHNKVQLTSSKTVEEKDIFDVIKQVLEMQRSLSTEASPSDVLNAFKIFAELLKAITDPKTMEFVKMISTKLSGGEKA
Ga0187310_128099	F094113	N/A	VRKILNRNTDRFIFFSYHEDIMAVQIFSSRIKHEIKDKNVLAILESLYQLYTRCHISRNYSDVVEKSVDQMKNENEISIQNLLLCYVRKANTITFPVMWEWKKKSEFLLIHDEFLPADYDYNNWQKHIEFEEYIEFKLLSTPARKIISPPETKTIMLTQQEKEFIMKLKKEYNYETIDDAIMHLLKNSTGWKLISLITRLLNENITLKEIDENLGIFGDFIFIFAEQKNDEDEIKIIADFYPLVHTIDLGKVIEVGKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187310_12809

Overview

Ecosystem & Geography

Associated Families

Sequences