Scaffold Ga0187310_12510

Overview

Basic Information

• Taxon OID: 3300017696
• Scaffold ID: Ga0187310_12510
• Source Dataset Name: Hotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 6. Combined Assembly of Gp0212723, Gp0212724
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Stanford University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13851
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (86.36%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Alphalipothrixvirus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hotspring Sediment → Yellowstone National Park Obsidian Pool Microbial Communities

Source Dataset Sampling Location

• Location Name: YNP, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.428
  • Long. (^o): -110.5885

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056742	Metagenome / Metatranscriptome	137	Y
F063848	Metagenome / Metatranscriptome	129	N
F070317	Metagenome / Metatranscriptome	123	Y
F077499	Metagenome / Metatranscriptome	117	Y
F085905	Metagenome	111	N
F087445	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187310_1251016	F087445	GGAG	VQKLMSMSEYDLKRVFKMIPIDKRLALALDTIQEYQSIQNKFNNLLNGLAMNSPKVREVVDSARRNRKPIDRLADMFMDMMETMLKSNAMSLTDEDKVKLKEKLKEVMESEE
Ga0187310_1251019	F063848	N/A	VAKKRRSVHDPTLSVIHYQEQLEKMAKAYEQSSTRRNQRAVNGFTVLKQVQSTVRDYLNEVSQTLKAPVIAQLAVEFIGIAMAYLKASNEGYNSYALTGRVAQIATLRATNIIHGTTLSCAQVGEIINGMLKKLSGVTTDPLTFTEEDGVCKATVANPLTKLSVASASTGYTVSLTDILKAKTPEEVLMAK
Ga0187310_125102	F056742	AGG	VKLSDCRYRCKKSYFRRSLFVRMFINEVEKVYQVKVKSCEEFCKFYVLFLSVAEILYGKHYNYAIFKAISRGRPNLYACIKCNSTLTAEESITHTLQHMKQLGYKPLAYNENI
Ga0187310_1251020	F085905	GGAGG	LSFPSSRLSQFDYVGMNAYWLNIRLKYFTDPMLYAVATGIWVINLMDDVDIAETGTQKNFEYGLIYVYSNSRIDTLFIVALTHYFNVKREREYYRSIPMDGLQNIMKSLVDFMNDKLKILDKLKEKIDERVVLMMWNQLYVFVMGFLYGLYGRDAEAVFQQVVARHLLPYSILEVIRRYTKK
Ga0187310_125103	F077499	AGG	MADLFIFPNESLKPVSYPNITNAEIIFVLTISIPIGSHPESDTPMEEKVKFLSTYTPLEFQKIHYMKTIDKALDILKHFLYTREDNVLFEIANKINSLYDVKELINKVKDVECVKDLKTLNITLTEAKRYIYPDISLSKYASAQAKQLGIKKYEYYARLFQCYIETDKNLDMLTLFRVANLVFNFLRINNLSYIIKKMQFKDDNIGRIAEKIKQRVKITLDAMAERKTTEPDIDILNSITIKIKEIDLG
Ga0187310_125106	F070317	AGAAGG	MTQETVNKMSALEEIKELNLERVVKDAQEGEVCVVNKILKGRLTDLMPLIRDPANMSQKAMDFIQSRGEDIFYLFQCTTRQGRNVKLLVRQSFDTRSTFYNLMKKYKTIKVGDEINVFYNPEKRRYDFLL